PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136526.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 171aa    MW: 18727.4 Da    PI: 6.9986
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136526.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-0589111123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ CgksF++   L  H  +H
  XP_009136526.1  89 YKCSVCGKSFPSYQALGGHKTSH 111
                     9***********99998888777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.64E-686113No hitNo description
PROSITE profilePS5015710.74189111IPR007087Zinc finger, C2H2
SMARTSM003550.002289111IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-489111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139129.2E-1589113IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
PfamPF139121.7E-7115131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MALDTLNSPT STTAPPPFLT EPENLESWTK RKRTKRHRTV DQSHPPSEEE YLAICLLMLA  60
RGSSSSSSND GNDHHSPPAP PSDHHHRDYK CSVCGKSFPS YQALGGHKTS HRKPSFPSGQ  120
ALGGHKRCHY DGGNGNGSNN HGFDLNLPAD HDETLVKSQL SGEELKSESD Y
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136526.11e-124PREDICTED: zinc finger protein AZF1 isoform X2
SwissprotQ9SSW11e-47AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A078ELW31e-113A0A078ELW3_BRANA; BnaA03g40650D protein
STRINGBra012914.1-P1e-101(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.14e-43C2H2 family protein